My 20014 F type "S" windows work fine with the roof open, but with the roof closed, they immediately open as soon as they touch the soft top. They will close if I slowly inch them up. It looks to me like the sensitivity needs adjusting. Does anyone know if this needs to be done by a dealer, or is there a menu setting that I can adjust?

 

Look up 'Window reset' in your owner's manual. You can also search the forum, there are many threads discussing it. Easy to do, and likely will fix your issue.